Publications

• Modeling the Human Immune Response to Severe Influenza Infection in an Immunocompetent Lung-on-Chip.
  Rachel Ringquist, Eshant Bhatia, Paramita Chatterjee, Drishti Maniar, Liana Kramer et al.; Nature BME, Accepted Nov. 2024.
• Single-cell transcriptome and crosstalk analysis reveal systemic alteration of immune cell phenotype and key pathways in the bone marrow of patients with knee osteoarthritis.
  Paramita Chatterjee, Hazel Y. Stevens, Linda E. Kippner, Annie C. Bowles-Welch, Hicham Drissi, Kenneth Mautner, Carolyn Yeago, Greg Gibson, Krishnendu Roy; iScience, Sep 20, 2024. Link to publication
• Multi-Arm Randomized Multicenter Trial of Cellular Therapy for Osteoarthritis (MILES): The Need for Personalized Therapeutic Approaches for Cell-based Treatments of Knee Osteoarthritis.
  Dr. Michael Gottschalk, Dr. Scott Boden, Ms. Alison Akard, Professor Won Bae, Ms. Lora Black, Dr. Blake Boggess, Ms. Paramita Chatterjee et al.; Nature Medicine, 29, 3120–3126 (2023). Link to publication
• Single-cell epitope-transcriptomics reveal lung stromal and immune cell response kinetics to nanoparticle-delivered RIG-I and TLR4 agonists.
  Keenum MC, Chatterjee P, Atalis A, Pandey B, Jimenez A, Roy K; Biomaterials, Mar 22, 2023; 297:122097. Link to publication
• Systemic Immune Modulation Alters Local Bone Regeneration in a Delayed Treatment Composite Model of Non-Union Extremity Trauma.
  Casey E Vantucci, Tyler Guyer, Kelly Leguineche, Paramita Chatterjee, Angela Lin et al.; Frontiers in Surgery, Jul 7, 2022. Link to publication
• Single-cell RNA-seq of out-of-thaw mesenchymal stromal cells shows tissue-of-origin differences and inter-donor cell-cycle variations.
  Medrano-Trochez, C., Chatterjee, P., Pradhan, P. et al.; Stem Cell Research & Therapy, 12, 565 (2021). Link to publication
• Evolution of DNA methylation in the human brain.
  Jeong, H., Mendizabal, I., Berto, S., Paramita Chatterjee et al.; Nature Communications, 12, 2021. Link to publication
• Genome-wide variation in DNA methylation linked to developmental stage and chromosomal suppression of recombination in white-throated sparrows.
  Sun, Dan; Layman, Thomas; Jeong, Hyeonsoo; Chatterjee, Paramita; Grogan, Kathleen; Merritt, Jennifer; Maney, Donna; Yi, Soojin; Molecular Ecology, Jan 9, 2021. Link to publication
• Lineage and parent-of-origin effects in DNA methylation of honey bees (Apis mellifera) revealed by reciprocal crosses and whole-genome bisulfite sequencing.
  Xin Wu, David A. Galbraith, Paramita Chatterjee et al.; Genome Biology and Evolution, Jun 29, 2020. Link to publication
• Distinct epigenomic and transcriptomic reprogramming associated with Wolbachia-mediated asexuality.
  Xin Wu, Amelia R.I. Lindsey, Paramita Chatterjee et al.; PLOS Pathogens, Mar 18, 2020. Link to publication
• Accelerated evolution of oligodendrocytes in human brain.
  Berto, S.; Mendizabal, I.; Usui, N.; Toriumi, K.; Chatterjee, Paramita et al.; Proceedings of the National Academy of Sciences, Oct 21, 2019. Link to publication
• Regional epigenetic differentiation of the Z Chromosome between sexes in a female-heterogametic system.
  Sun, Dan; Maney, Donna; Layman, Thomas; Chatterjee, Paramita et al.; Genome Research, Oct 29, 2019. Link to publication
• Cell-type specific epigenetic links to schizophrenia risk in brain.
  Mendizabal, I.; Berto, S.; Usui, N.; Toriumi, K.; Chatterjee, Paramita et al.; Genome Biology, Jul 9, 2019. Link to publication
• Selection on the regulation of sympathetic nervous activity in humans and chimpanzees.
  Lee, Kang Seon; Chatterjee, Paramita et al.; PLOS Genetics, Apr 19, 2018. Link to publication